DIGITAL REPOSITORY | Prodelphinus

DIGITAL REPOSITORY
(Repositorio digital)

FISHERIES

Darquea,J.J., C. Ortiz-Alvarez, F. Cordova-Zavaleta, R. Medina, A. Bielli, J. Alfaro-Shigueto, J.C. Mangel. 2020. Trialing net illumination as a mitigation measure in gillnet artisanal fishery in Ecuador. Latin American Journal of Aquatic Resources 48(3): 446-455.

Bielli, A., J.C. Mangel, P. Doherty, B.G. Godley, C. Ortiz, A. Pasara, J. Wang, J. Alfaro-Shigueto. 2020. An illuminating idea to reduce bycatch in the Peruvian small-scale gillnet fishery. Biological Conservation 241(2020): 108277.

Calderwood, J., Marshall, C. T., Haflinger, K., Alfaro-Shigueto, J., Mangel, J. C., & Reid, D. G. (2023). An evaluation of information sharing schemes to identify what motivates fishers to share catch information. ICES Journal of Marine Science, 80(3), 556-577.

Liang, D., Bailey, H., Hoover, A. L., Eckert, S., Zarate, P., Alfaro‐Shigueto, J., ... & Shillinger, G. L. (2023). Integrating telemetry and point observations to inform management and conservation of migratory marine species. Ecosphere, 14(1), e4375.

VanCompernolle, M., Morris, J., Calich, H. J., Rodríguez, J. P., Marley, S. A., Pearce, J. R., ... & Alvarado, D. J. (2026). Vulnerability of marine megafauna to global at‐sea anthropogenic threats. Conservation biology, 40(1), e70147.

Alfaro Shigueto, J., Mangel, J., Pajuelo, M., Dutton, P., Seminoff, J., Godley, B. 2010. Where small scale can have a large impact: Structure and characterization of small-scale fisheries in Peru. Fisheries Research 106: 8-17.

Berggren, P., Alfaro-Shigueto, J., Mangel, J. C., Sharpe, M., Jiddawi, N. S., Neasham, J., ... & Temple, A. J. (2026). Upcycled glass and plastic bottles offer potential low-cost mitigation to megafauna bycatch in gillnet fisheries. Fisheries Research, 298, 107748.

Gonzalez-Pestana, A., Thorne, D. C., Alfaro-Shigueto, J., & Mangel, J. C. (2023). Vulnerabilities of northern Peruvian small-scale fishing communities revealed by the COVID-19 pandemic. Marine Policy, 149, 105503.

Peraltilla, S., Meneses, G., Gutiérrez, M., & Alfaro-Shigueto, J. (2024). El Programa Salvamares de la Sociedad Nacional de Pesquería: contribuyendo con la sostenibilidad del ecosistema marino peruano. South Sustainability, 5(2).

Arlidge, W. N., Firth, J. A., Alfaro-Shigueto, J., Ibanez-Erquiaga, B., Mangel, J. C., Squires, D., & Milner-Gulland, E. J. (2021). Assessing information-sharing networks within small-scale fisheries and the implications for conservation interventions. Royal Society Open Science, 8(11), 211240.

Bartholomew DC, Mangel JC, Alfaro-Shigueto J, Pingo S, Jimenez A, Godley BJ. Remote electronic monitoring as a potential alternative to on-board observers in small-scale fisheries. Biol. Conserv. 2018;219(2018):35–45.

Botterell, Z. L., Ribeiro, F., Alarcón-Ruales, D., Alfaro, E., Alfaro-Shigueto, J., Allan, N., ... & Galloway, T. S. (2024). Plastic pollution transcends marine protected area boundaries in the eastern tropical and south-eastern Pacific. Marine pollution bulletin, 201, 116271.

Guidino, C., Solano Sare, A., Ortiz-Alvarez, C., Alfaro-Cordova, E., Bielli, A., Asencio Guzman, I., ... & Mangel, J. C. (2024). At-sea solid waste production by a small-scale fishery in Peru. Waste Management & Research, 42(4), 344-351..

Ramirez, J. L., Rosas-Puchuri, U., Cañedo, R. M., Alfaro-Shigueto, J., Ayon, P., Zelada-Mázmela, E., ... & Velez-Zuazo, X. (2020). DNA barcoding in the Southeast Pacific marine realm: Low coverage and geographic representation despite high diversity. PloS one, 15(12), e0244323.

DOLPHINS, PORPOISES AND WHALES

Cossíos, D., Alcázar, P., Fajardo, U., Chávez, K., Alfaro Shigueto, J., Cárdenas-Alayza, S., Valqui, J., Montero, F., Lescano, J., Quevedo, M., Vivar, E., Leite, R., Ledesma, K., Medina, C., Maffei, L., Amanzo, J., Chávez, C., Enciso, M., García, A., Mangel, J., Mendoza, J., Rojas, G., Silva, L., Villegas, L., Williams, R., Zúñiga, A., Cruz, A., IMARPE., Ruiz, E., DSGFFS. 2012. The order Carnivora (Mammalia) in Peru: State of Knowledge and research priorities for its conservation. Rev. peru. biol. 19.1:17-26.

Rosa, S., Milinkovitch, M., Van Waerebeek, K., Berck, J., Oporto, J., Alfaro Shigueto, J., Van Bressem, M-F., Goodall, N., Cassens, I. 2005. Population structure of nuclear and mitochondrial DNA variation among South American Burmeister´s porpoises (Phocoena spinipinnis ). Conservation Genetics 6: 431-443.

Clay, T.A., J. Alfaro-Shigueto, N. Tregenza, B.J. Godley, J.C. Mangel. 2019. Pingers reduce the activity of Burmeister’s porpoise around small-scale gillnet vessels. Marine Ecology Progress Series 626: 197-208.

Van Bressem, M-F., Cassonnet, P., Rector, A., Desaintes, C., Van Waerebeek, K., Alfaro Shigueto, J., Van Ranst, M., Orth, G. 2007. Genital warts in Burmeister's porpoises: Characterization of Phocoena spinipinnis papillomavirus type 1 (PsPV-1), and evidence for a second, distantly related PsPV. Journal of General Virology 88: 1928-1933.

Tzika, A.C., D'Amico, E., Alfaro Shigueto, J., Mangel, J., Van Waerebeek, K., Milinkovitch, M. 2010. Molecular identification of small cetacean samples from Peruvian fish markets. Conservation Genetics 11: 2207-2218.

Campbell, E., Alfaro-Shigueto, J., Mangel, J. C., Mena, J. L., Thurstan, R. H., Godley, B. J., & March, D. (2023). Satellite-monitored movements of the Amazon River dolphin and considerations for their conservation. Oryx, 57(6), 769-779.

Mosquera-Guerra, F., Trujillo, F., Perez-Torres, J., Mantilla-Meluk, H., Franco-Leon, N., Paschoalini, M., ... & Armenteras-Pascual, D. (2022). Strategy to identify areas of use of Amazon River dolphins. Frontiers in Marine Science, 9, 838988.

Suarez-Yana, T., Colchao-Claux, P., Mangel, J. C., Campbell, E., & Alfaro-Shigueto, J. (2023). Morphological characterization of blood cells in Amazon River dolphin Inia geoffrensis: a case study. Latin american journal of aquatic research, 51(4), 587-591.

Mangel, J., Alfaro Shigueto, J., Van Waerebeek, K., Caceres, C., Bearhop, S., Witt, M., Godley, B. 2010. Small cetacean captures in Peruvian artisanal fisheries: High despite protective legislation. Biological Conservation 143: 136-143.

Van Waerebeek, K., Van Bressem, M-F., Felix, F., Alfaro Shigueto, J., Garcia Godos, A., Chavez Lisambart, L., Onton, K., Montes, D., Bello, R. 1997. Mortality of dolphins and porpoises in coastal fisheries off Peru and southern Ecuador in 1994. Biological Conservation 81: 43-49.

Van Waerebeek, K., Reyes, J.C., Alfaro Shigueto , J. 1993. Helminth parasites and phoronts of dusky dolphins Lagenorhynchus obscurus (Gray, 1828) from Peru. Aquatic Mammals 19.3: 159-169.

Campbell, E., Alfaro-Shigueto, J., Godley, B. J., & Mangel, J. C. 2017. Abundance estimate of the Amazon River dolphin (Inia geoffrensis ) and the tucuxi (Sotalia fluviatilis ) in southern Ucayali, Peru. Latin american journal of aquatic research, 45(5), 957-969.

Guidino, C., E. Campbell, B. Alcorta, V. Gonzalez, J.C. Mangel, A.S. Pacheco, S. Silva, J. Alfaro-Shigueto. 2020. Whale-watching in northern Peru: An economic boom? Tourism in Marine Environments 15(1): 1-10.

Campbell, E., J.C. Mangel, J. Alfaro-Shigueto, J.L. Mena, R.H. Thurstan, B.J. Godley. 2020. Coexisting in the Amazon River: Interactions between fisheries and river dolphins. Journal of Nature Conservation 56(2020): 125859.

Castro Ayala, C., García-Cegarra, A. M., Uceda-Vega, P., Aguilar, L., Kelez, S., Buchan, S. J., ... & Van Waerebeek, K. (2024). New northernmost distribution records of the Eastern South Pacific southern right whale (Eubalaena australis), including the first cases from Ecuador and northern Peru. PLoS One, 19(11), e0312528.

Ortés‐Villauriz, R., Wahlberg, M., Gómez‐Lobo, D. A., Alfaro‐Shigueto, J., Heinrich, S., Mangel, J. C., ... & Martin, M. J. (2026). Quiet Signals of Burmeister's Porpoises (Phocoena spinipinnis) Recorded in Chile and Peru. Marine Mammal Science, 42(2), e70173.

Van Waerebeek, K., Reyes, J. C., & Alfaro, J. (1993). Helminth parasites and phoronts of dusky dolphins Lagenorhynchus obscurus (Gray, 1828) from Peru. Aquatic Mammals, 19, 159-159.

Mosquera-Guerra, F., Trujillo, F., Oliveira-da-Costa, M., Marmontel, M., Van Damme, P. A., Franco, N., ... & Armenteras-Pascual, D. (2021). Home range and movements of Amazon river dolphins Inia geoffrensis in the Amazon and Orinoco river basins. Endangered Species Research, 45, 269-282.

Van Bressem, M-F., Van Waerebeek, K., Montes, D., Kennedy, S., Reyes, J.C., Garcia Godos, A., Onton, K., Alfaro Shigueto, J. 2006. Diseases, lesions and malformations in the long-beaked common dolphin Delphinus capensis from the Southeast Pacific. Diseases of Aquatic Organisms 68: 149-165.

García, I., Van Waerebeek, K., Alfaro-Shigueto, J., Mangel, J. 2013. Entanglements of large Cetaceans in Peru: Few records but high risk. Pacific Science. 67.1:1-16.

Van Bressem, M-F., Alfaro Shigueto, J., Geysen, K., Onton, K., Vega, D., Chavez Lisambart, L., Van Waerebeek, K. 2006. Dolphins and children: A blueprint for marine environmental education in Peru. Applied Environmental Education and Communication 5:183-191.

Campbell, E., Pasara, A., J.C. Mangel, J. Alfaro-Shigueto. In press. Use of small cetaceans as bait in small-scale fisheries in Peru. Frontiers in Marine Conservation.

Campbell, E., Alfaro-Shigueto, J., Aliaga-Rossel, E., Beasley, I., Briceno, Y., Caballero, S., ... & Godley, B. J. (2022). Challenges and priorities for river cetacean conservation. Endangered Species Research, 49, 13-42.

Mosquera-Guerra, F., F. Trujillo, J. Pérez-Torres, H. Mantilla-Meluk, N. Franco-León, P. A. V. Damme, E. Campbell, J. Alfaro-Shigueto, J. L. Mena, J. C. Mangel, J. S. U. Oviedo, M. J. Valderrama, E. Acosta-Lugo and D. Armenteras-Pascual (2023). "Existing Relationship Between Morphological Predictors and Home Range Size of the Amazon River Dolphin (Inia spp.) in the Amazon and Orinoco Basins?" London Journal of Research in Science: Natural and Formal 23(11): 17–37.

Ortiz-Alvarez, C., Ortés-Villauriz, R., Mangel, J. C., Alfaro-Shigueto, J., & Heinrich, S. (2025). Concurrent bycatch and population assessments of Burmeister’s porpoises in northern Peru reveal unsustainable levels of mortality. ICES Journal of Marine Science, 82(8), fsaf144.

Vega, D., Van Waerebeek, K., Alfaro-Shigueto, J., Reyes, J. C., & Van Bressem, M. F. (2024). Macroscopic and histologic characteristics of sexual maturation in the Burmeister’s porpoise Phocoena spinipinnis from Peru. Latin American Journal of Aquatic Mammals, 19(2), 142-158.

SEA TURTLES

Velez-Zuazo X, Mangel JC, Seminoff JA, Wallace BP, Alfaro-Shigueto J. Preface: Filling the gaps in sea turtle research and conservation in the region where it began: Latin America. Lat. Am. J. Aquat. Res. 2017;45(3):501–5.

Ortiz, N & Mangel, Jeffrey & Wang, John & Alfaro Shigueto, Joanna & Pingo Paiva, Sergio & Jimenez Heredia, Astrid & Suarez, Tania & Swimmer, Yonat & Carvalho, F & Godley, Brendan. 2016. Reducing green turtle bycatch in small-scale fisheries using illuminated gillnets: The cost of saving a sea turtle. Marine Ecology Progress Series. 545. 10.3354/meps11610.

Gaos, A., Abreu-Grobois, F.A., Alfaro Shigueto, J., Amorocho, D., Arauz, R., Baquero, A., Briseño, R., Chacón, D., Dueñas, C., Hasbún, C., Liles, M., Mariona, G., Muccio, C., Muñoz, J.P., Nichols, W.J., Peña, M., Seminoff, J., Vásquez, M., Urteaga, J., Wallace, B., Yañez, I.L., Zárate, P . 2010. Signs of hope in the eastern Pacific: international collaboration reveals encouraging status for the severely depleted population of hawksbill turtles: Eretmochelys imbricata . Oryx: 1-7.

Pfaller, J., Alfaro-Shigueto, J., Balazs, G., Ishihara, T., Kopitsky, K., Mangel, J., Peckham, S., Bolten, A., Bjorndal, K. 2014. Hitchhikers reveal cryptic host behavior: new insights from the association between Planes major and sea turtles in the Pacific Ocean. Marine Biology 161.9: 2167-2178.

The Laud OPO Network. 2020. Enhanced, coordinated conservation efforts required to avoid extinction of critically endangered Eastern Pacific leatherbacks. Scientific Reports 10:4772.

Alfaro Shigueto, J., Mangel, J., Dutton, P., Seminoff, J., Godley, J. 2012. Trading information for conservation: a novel use of radio broadcasting to reduce sea turtle bycatch. Fauna & Flora International, Oryx 46. 3: 332-339.

Alfaro Shigueto, J., Mangel, J., Bernedo, F., Dutton, P., Seminoff, J., Godley, B. 2011. Small scale fisheries of Peru: a major sink for marine turtles in the Pacific. Journal of Applied Ecology 10.11: 1-9.

Griffiths, S. P., Wallace, B. P., Caceres, V., Rodriguez, L. H., Lopez, J., Abrego, M., ... & Zarate, P. (2024). Vulnerability of the Critically Endangered leatherback turtle to fisheries bycatch in the eastern Pacific Ocean. II. Assessment of mitigation measures. Endangered Species Research, 53, 295-326.

Mangel, J. C., Pingo, S., Jimenez, A., Doherty, P. D., & Alfaro-Shigueto, J. (2024). Post-release movements of leatherback turtles captured by the Peruvian small-scale driftnet fishery: insights from satellite telemetry. Endangered Species Research, 54, 261-275.

Alfaro-Shigueto J, Mangel JC, Darquea J, Donoso M, Baquero A, Doherty PD, et al. Untangling the impacts of nets in the southeastern Pacific: Rapid assessment of marine turtle bycatch to set conservation priorities in small-scale fisheries. Fish. Res. 2018;206(2018):185–92.

Suarez, Tania & Montes, David & Zúñiga, Renato & Mangel, Jeffrey & Alfaro Shigueto, Joanna. 2016. Hematologic, Morphometric, and Biochemical Analytes of Clinically Healthy Green Sea Turtles (Chelonia mydas ) in Peru. Chelonian Conservation and Biology. 15. 153-157. 10.2744/CCB-1160.1.

Gilman, E., Gearhart, J., Price, B., Eckert, S., Milliken, H., Wang, J., Swimmer, Y., Shiode, D., Abe, O., Peckham, H., Chaloupka, M., Hall, M., Mangel, J., Alfaro Shigueto, J., Dalzell, P., Ishizaki, A. 2010. Mitigating sea turtle by-catch in coastal passive net fisheries. Fish and Fisheries 11:57-88.

Gaos, A., M.J. Liles, V. Gadea, A. Peña de Niz, F. Vallejo, C. Miranda, J. Jessica Darquea, A. Henriquez, E. Altamirano, A. Rivera, S. Chavarría, D. Melero, J. Urteaga, C.M. Pacheco, D. Chácon, C. LeMarie, J. Alfaro-Shigueto, J.C. Mangel, I. Yañez & J.A. Seminoff. 2017. Living on the Edge: hawksbill turtle nesting and conservation along the eastern Pacific rim. Lat. Am. J. Aquat. Res., 45(3): 572-584

Alfaro Shigueto, J., Mangel, J., Caceres, C., Seminoff, J., Gaos, A., Yañez, I. 2010. Hawksbill turtles in the Peruvian costal fisheries. Marine Turtle Newsletter 129: 19-21.

Alfaro Shigueto, J., Dutton, P., Van Bressem, M-F., Mangel, J. 2007. Interactions between leatherback turtles and Peruvian artisanal fisheries. Chelonian Conservation and Biology 6.1: 129-134.

Pfaller, J., Alfaro Shigueto, J., Giffoni, B., Ishihara, T., Mangel, J., Peckham, H., Bjorndal, K., Baeza, J. 2014. Social monogamy in the crab Planes major , a facultative symbiont of loggerhead sea turtles. Journal of Experimental Marine Biology and Ecology 461: 124-132.

Mangel, J., Alfaro Shigueto, J., Witt, M., Dutton, P., Seminoff, J., Godley, B. 2011. Post-capture movements of loggerhead turtles in the southeastern Pacific Ocean assessed by satellite tracking. Marine Ecology Progress Series 433: 261-272.

Grimm, K., Mancini, A., Seminoff, J., Alfaro-Shigueto, J., Valencia, V. A., Rocha, A. R. B., ... & Wallace, B. (2025). Fisher-based assessments of sea turtle bycatch in small-scale fisheries in Pacific Mexico. Endangered Species Research, 58, 205-221.

Santillán, L., Jimenez, A., Pingo, S., Alfaro-Shigueto, J., Pajuelo, M., Montes, D., & Mangel, J. C. (2025). Persistent macroplastics in the stomach contents of the green turtle Chelonia mydas (Linnaeus, 1758) on the northern coast of Peru. Revista peruana de biología, 32(4), e31408-e31408.

Degenford, J. H., Liang, D., Bailey, H., Hoover, A. L., Zarate, P., Azócar, J., ... & Shillinger, G. L. (2021). Using fisheries observation data to develop a predictive species distribution model for endangered sea turtles. Conservation Science and Practice, 3(2), e349.

Pingo, S., A. Jimenez, J. Alfaro-Shigueto & J.C. Mangel. 2017. Incidental capture of sea turtles in the artisanal fishery in Sechura Bay, northern Peru. Lat. Am. J. Aquat. Res., 45(3): 606-614.

Pajuelo, M., Bjorndal, K., Alfaro Shigueto, J., Seminoff, J., Mangel, J., Bolten, A.B. 2010. Stable isotope variation in loggerhead turtles reveals Pacific-Atlantic oceanographic differences. Marine Ecology Progress Series 417: 277–285.

Alfaro Shigueto, J., Mangel, J., Seminoff, J., Dutton, P. 2008. Demography of loggerhead turtles Caretta caretta in the southeastern Pacific Ocean: fisheries-based observations and implications for management. Endangered Species Research 5: 129-135.

Ortiz-Alvarez, C., M. Pajuelo, D. Grados, M.E. Abrego, M. Barrantes. A.Cotto Sanchez, L.G. Fonseca, V. Gadea Espinal, J.C. Mangel, J.M. Rguez-Baron, P. Santidrian Tomillo, L. Sarti, H. Santana, , G. Shillinger, M. Prado, B. Wallace, A. Williard, A. Zavala, J. Alfaro-Shigueto. 2020. Rapid assessments of leatherback bycatch across nesting and interesting areas from the eastern Pacific Ocean. Frontiers in Marine Science 6: article 813.

Jiménez, A., S. Pingo, J. Alfaro-Shigueto & J.C. Mangel. 2017. Feeding ecology of the green turtle Chelonia mydas in northern Peru. Lat. Am. J. Aquat. Res., 45(3): 585-596.

Arlidge, W., Squires, D., J. Alfaro-Shigueto, Hollie Booth, J.C. Mangel, E.J. Milner-Gulland. 2020. A mitigation hierarchy approach for managing sea turtle captures in small-scale fisheries. Frontiers in Marine Science 7: Article 49.

Alfaro Shigueto, J., Dutton, P., Mangel, J., Vega, D. 2004. First confirmed occurrence of loggerhead turtles in Peru. Marine Turtle Newsletter 103: 7-11.

Kot, C. Y., Åkesson, S., Alfaro‐Shigueto, J., Amorocho Llanos, D. F., Antonopoulou, M., Balazs, G. H., ... & Halpin, P. N. (2022). Network analysis of sea turtle movements and connectivity: A tool for conservation prioritization. Diversity and Distributions, 28(4), 810-829.

Wallace, B. P., Bandimere, A. N., Abreu-Grobois, A., Acosta, H., Akiti, J., Akomedi, M., ... & Mast, R. B. (2025). Updated global conservation status and priorities for marine turtles. Endangered Species Research, 56, 247-276.

SEA BIRDS

Hidalgo Aranzamendi, N., Alfaro Shigueto, J., Zavalaga, C. 2010. New records of broad-billed prions (Pachyptila vittata ) in southern Peru. Notornis 57: 39-42.

Jimenez Uzcategui, G., Mangel, J., Alfaro Shigueto, J., Anderson, D. 2006. Fishery Bycatch of the Waved albatross Phoebastria irrorata , a need for implementation of agreements. Galapagos Research 64: 7-9.

Zavalaga, C., Engblom, G., Alfaro Shigueto, J., Mangel, J. 2010. Immature northern giant petrels Macronectes halli visiting the coast of Peru. Marine Ornithology 37: 237-240.

Zavalaga, Carlos & Alfaro Shigueto, Joanna. (2015). Unveiling an Important Humboldt Penguin ( Spheniscus humboldti ) Breeding Colony in Perú and the Need for Its Protection Against the Potential Impact of Guano Harvest. Waterbirds. 38. 302-307. 10.1675/063.038.0311.

Alfaro Shigueto, Joanna & Mangel, Jeffrey & Valenzuela, Katherine & Arias-Schreiber, Milena. (2016). The intentional harvest of waved albatrosses Phoebastria irrorata by small-scale offshore fishermen from Salaverry port, Peru. Pan-American Journal of Aquatic Sciences. 11. 70-77.

Mangel JC,Wang J, Alfaro-Shigueto J, Pingo S, Jimenez A, Carvalho F, Swimmer Y, Godley BJ. 2018 Illuminating gillnets to save seabirds and the potential for multi-taxa bycatch mitigation. R. Soc. open sci. 5: 180254.

Awkerman, J., Huyvaert, K., Mangel, J., Alfaro Shigueto, J., Anderson, D. 2006. Incidental and intentional catch threatens Galapagos waved albatross. Biological Conservation 133: 483-489.

Garcia Godos, I., Van Waerebeek, K., Reyes, J.C., Alfaro Shigueto, J., Arias-Schreiber, M. 2007. Prey occurrence in the stomach contents of four small cetacean species in Peru. Lajam 6.2: 171-183.

Segura-Cobeña, E., Alfaro-Shigueto, J., Colodro, V., Gutiérrez-Guzmán, H., Arrese-Dávila, V., Torrejón-Zegarra, R., ... & Mangel, J. C. (2025). Use of rapid assessments of fishery bycatch of Humboldt penguins Spheniscus humboldti in Peru and Chile to help identify conservation priorities. Royal Society Open Science, 12(8).

SHARKS, STINGRAY AND OTHER ELASMOBRANCHS

Acuna-Perales, N., Cordova-Zavaleta, F., Alfaro-Shigueto, J. and Mangel C. J. 2021. First records of Megamouth shark Megachasma pelagios (Taylor, Compagno & Struhsaker, 1983) as bycatch in Peruvian small-scale net fisheries. Marine Biodiversity Records.

Benavides, M., Feldheim, K., Duffy, C., Wintner, S., Braccini, M., Boomer, J., Huveneers, C., Rogers, P., Mangel, J., Alfaro Shigueto, J., Cartamil, D., Chapman, D. 2011. Phylogeography of the copper shark (Carcharhinus brachyurus ) in the southern hemisphere: implications for the conservation of a coastal apex predator. Marine and Freshwater Research 62: 861-869.

Gonzalez-Pestana A, Alfaro-Shigueto J, Mangel JC, Espinoza P. 2017. Mercury levels in the Smooth Hammerhead Shark Sphyrna zygaena (Carcharhiniformes: Sphyrnidae) from Northern Peru. Rev. Peru. Biol. 24(4):407–11.

Gonzalez-Pestana A, Alfaro-Shigueto J, Mangel JC. 2019. Aspects of reproductive biology of the humpback smooth-hound shark (Mustelus whitneyi) off northern Peru. Mar. Freshw. Res.

González-Pestana A, Acuña-Perales N, Córdova F, Coasaca J, Alfaro E, Alfaro-Shigueto J, et al. 2019. Feeding habits of thresher sharks Alopias sp. in northern Peru: Predators of Humboldt squid (Dosidicus gigas). J. Mar. Biol. Assoc. United Kingdom. 99(3):695–702.

Gonzalez-Pestana, A., Alfaro-Shigueto, J., Velez-Zuazo, X., & Mangel, J. C. (2024). Natural history, fisheries, and conservation of the Pacific guitarfish: signs of trouble in Peruvian waters. Endangered Species Research, 54, 123-140.

Mouton, T. L., Gonzalez-Pestana, A., Rohner, C. A., Charles, R., García-Rodríguez, E., Kyne, P. M., ... & Jabado, R. W. (2025). Shortfalls in the protection of Important Shark and Ray Areas undermine shark conservation efforts in the Central and South American Pacific. Marine Policy, 171, 106448.

Cañedo-Apolaya, R. M., Ortiz-Alvarez, C., Alfaro-Cordova, E., Alfaro-Shigueto, J., Velez-Zuazo, X., Mangel, J. C., ... & Ramirez, J. L. (2021). Species delimitation of southeast Pacific angel sharks (Squatina spp.) reveals hidden diversity through DNA barcoding. Diversity, 13(5), 177.

Coasaca-Céspedes JJ, Segura-Cobeña E, Montero-Taboada R, Gonzalez-Pestana A, Alfaro-Córdova E, Alfaro-Shigueto J, et al. 2018. Preliminary analysis of the feeding habits of batoids from the genera Mobula and Myliobatis in northern Peru. Rev. Biol. Mar. Oceanogr. 53(3):367–74.

Alfaro-Cordova E, Del Solar A, Gonzalez-Pestana A, Acuña-Perales N, Coasaca J, Cordova-Zavaleta F, Alfaro-Shigueto, J. & Mangel, J. 2018. Isotopic niches of four commercially important pelagic elasmobranch species captured by the small-scale driftnet fishery of northern Peru. Lat. Am. J. Aquat. Res. 46(2):482–8.

Gonzalez-Pestana, A., Alfaro-Shigueto, J., Mangel, J.C. 2020. Diet, trophic interactions and possible ecological role of commercial sharks and batoids in northern Peruvian Waters. Journal of Fish Biology.

Córdova-Zavaleta F, Mendo J, Briones-Hernández SA, Acuña-Perales N, Gonzalez-Pestana A, Alfaro-Shigueto J, et al. 2018. Food habits of the blue shark, prionace glauca (Linnaeus, 1758), in waters off northern peru. Fish. Bull. 116(3–4):310–22.

Gonzalez-Pestana A, Acuña-Perales N, Coasaca-Cespedes J, Cordova-Zavaleta F, Alfaro-Shigueto J, Mangel JC, et al. 2017. Trophic ecology of the smooth hammerhead shark (Sphyrna Zygaena) off the coast of northern Peru. Fish. Bull. 115(4): 451–9.

González-Pestana, A., Velez-Zuazo, X., Alfaro-Shigueto, J., & Mangel, J. C. (2022). Batoid fishery in Peru (1950-2015): Magnitude, management and data needs. Revista de Biología Marina y Oceanografía, 57(Especial), 217-233.

Peña-Cutimbo, N., Cañedo-Apolaya, R. M., Cordero-Maldonado, C., Custodio-Uribe, A., Mangel, J., Polanco-Vásquez, F., & Alfaro-Shigueto, J. (2024). Biología reproductiva en soporte de la conservación: primera descripción de algunos estadios reproductivos del angelote chileno Squatina armata (Phillipi, 1987). South Sustainability, 5(2).

Doherty, P., Alfaro-Shigueto, J., Hodson, D., Mangel, J., Witt, M., Godley, B. 2014. Big catch, little sharks: Insight into Peruvian small-scale longline fisheries. Ecology and Evolutions.

Gilman, E., Clarke, S., Brothers, N., Alfaro Shigueto, J., Mandelman, J., Mangel, J., Petersen, S., Piovano, S., Thomson, N., Dalzell, P., Donoso, M., Goren, M., Werner, T. 2008. Shark interactions in pelagic longline fisheries. Marine Policy 32: 1-18.

Pajuelo M, Alfaro-Shigueto J, Romero M, Pásara-Polack A, Solano A, Vela G, et al. 2018. Occurrence and Bycatch of Juvenile and Neonate Whale Sharks (Rhincodon typus) in Peruvian Waters. Pacific Sci. 72(4):1–23.

Velez-Zuazo, Ximena & Alfaro Shigueto, Joanna & Mangel, Jeffrey & Papa, Riccardo & Agnarsson, Ingi. 2014. What barcode sequencing reveals about the shark fishery in Peru. Fisheries Research. 161. 34-41. 10.1016/j.fishres.2014.06.005.

Alfaro-Shigueto, J., Ebert, D. A., Guidino, C., Velez-Zuazo, X., Romero, J., & Mangel, J. C. (2022). Deep-sea Chondrichthyans associated with the Patagonian toothfish Dissostichus eleginoides fishery off the coast of Peru. Revista de Biología Marina y Oceanografía, 57(Especial), 249-254.

Jorgensen, S. J., Micheli, F., White, T. D., Van Houtan, K. S., Alfaro-Shigueto, J., Andrzejaczek, S., ... & Ferretti, F. (2022). Emergent research and priorities for shark and ray conservation. Endangered Species Research, 47, 171-203.

Alfaro-Cordova E, Del Solar A, Alfaro-Shigueto J, Mangel JC, Diaz B, Carrillo O, et al. Captures of manta and devil rays by small-scale gillnet fisheries in northern Peru. Fish. Res. [Internet]. Elsevier; 2017;195(2017):28–36. Available from: http://dx.doi.org/10.1016/j.fishres.2017.06.012

OTHER SPECIES

Mangel, J., Whitty, T., Medina Vogel, G., Alfaro Shigueto, J., Caceres, C., Godley, B. 2011. Latitudinal variation in diet and patterns of human interaction in the marine otter. Marine Mammal Science 27.2: E14-E25.

Nelms, S. E., Alfaro-Shigueto, J., Arnould, J. P., Avila, I. C., Nash, S. B., Campbell, E., ... & Godley, B. J. (2021). Marine mammal conservation over the horizon. Endangered Species Research, 44, 291-325.pdf

Davis, K. J., Alfaro‐Shigueto, J., Arlidge, W. N., Burton, M., Mangel, J. C., Mills, M., ... & Gelcich, S. (2021). Local disconnects in global discourses—The unintended consequences of marine mammal protection on small‐scale fishers. Conservation Letters, 14(6), e12835.

Vianna, J., Ayerdi, P., Medina-Vogel, G., Mangel, J., Zeballos, H., Apaza, M., Faugeron, S. 2010. Phylogeography of the Marine Otter (Lontra felina ): Historical and contemporary factors determining its distribution. Journal of Heredity 10.1: 1-14.

Sepúlveda, M., Szteren, D., Alfaro‐Shigueto, J., Crespo, E. A., Durán, L. R., Guerrero, A. I., ... & Oliveira, L. R. (2023). Sea lion and fur seal interactions with fisheries and aquaculture in South American waters: threats and management perspectives. Mammal Review, 53(2), 116-131.

Tierney, T., Whitney, J., Hearn, A., Weng, K., Peñaherrera, C., Jawad, I., Alfaro-Shigueto, J., Mangel, J., Karl, S. 2013. First record of the southern ocean sunfish, Mola ramsayi, in the Galápagos Marine Reserve. Marine Biodiversity Records.

Alfaro-Shigueto, J., J. Valqui & J.C. Mangel. 2011. New record of the marine otter Lontra felina (Molina, 1782) north to its current distribution. Ecologia Aplicada 10(2): 87-91.

Torrejón-Zegarra, R., Arrese-Dávila, V., De la Cruz, J., Ramírez, P., Alfaro-Shigueto, J., Mangel, J. C., ... & Correa, D. (2025). Size and body weight estimation of" gould octopus" Octopus mimus A. Gould, 1852 (Cephalopoda: Octopoda) from beak measurements in northern Peru. Latin American Journal of Aquatic Research, 53(4).

Mangel JC, Pajuelo M, Pasara-Polack A, Vela G, Segura-Cobeña E, Alfaro-Shigueto J. The effect of Peruvian small-scale fisheries on sunfishes (Molidae). J Fish Biol. 2019;94:77–85.

DIGITAL REPOSITORY (Repositorio digital)

DIGITAL REPOSITORY
(Repositorio digital)